I am very sceptical about the usgae of LLMs. In this post, I explore some of my own experiences with using ChatGPT to assist me in writing academic texts.

This paper uses cellular_raza to develop a model with cell-type specific interactions whereby cells self-assemble into regions of similar species which is also known as cell-sorting. We use this model to asses the parallelization performance of the numerical backend

How does individual behavior of cells lead to collective emergent phenomena: In our paper "cellular_raza: Cellular Agent-based Modeling from a Clean Slate", we publish a new agent-based simulation framework to model and study a variety of such cellular systems.

In this bookchapter we introduce the concepts of model-based experimental design and provide step-by-step instructions for finding the optimal design using the well-known Baranyi-Roberts growth model as an example.

We constructed a model which could qualitatively display how high/low affinities between autophagy receptors lead to phase separation on the surface of the cargo, thus ultimately inducing selective autophagy.

This mini-review discusses agent-based models as modeling techniques for studying pattern formation of multi-cellular systems in biology.