
cellular_raza
Paper Science Rust
10.21105/joss.07723
How does individual behavior of cells lead to collective emergent phenomena: In our paper "cellular_raza: Cellular Agent-based Modeling from a Clean Slate", we publish a new agent-based simulation framework to model and study a variety of such cellular systems.

Experimental Design for Predictive Models in Microbiology Depending on Environmental Variables
Paper Science Python
doi.org/10.1007/978-1-0716-4112-5_4
In this bookchapter we introduce the concepts of model-based experimental design and provide step-by-step instructions for finding the optimal design using the well-known Baranyi-Roberts growth model as an example.

Phase separation of initiation hubs on cargo is a trigger switch for selective autophagy
Paper Science Biology
doi.org/10.1038/s41556-024-01572-y
We constructed a model which could qualitatively display how high/low affinities between autophagy receptors lead to phase separation on the surface of the cargo, thus ultimately inducing selective autophagy.

Agent Based Models in Cellular Systems
Paper Science
doi.org/10.3389/fphy.2022.968409
This mini-review discusses agent-based models as modeling techniques for studying pattern formation of multi-cellular systems in biology.
Zero Values of the TOV Equation
Thesis Science
doi.org/10.48550/arXiv.2411.15264
My master thesis analyzed the zero-values of the TOV equation. It describes the density profile of general-relativistic spherically symmetrical stellar objects.